Faculty Publications from 2012
Regeneration of Different Plant Functional Types in a Masson Pine Forest Following Pine Wilt Disease, Guang Hu, Xuehong Xu, Yuling Wang, Gao Lu, Kenneth J. Feeley, and Mongjian Yu
Effects of Cyanobacterial Lipopolysaccharides from Microcystis on Glutathione-Based Detoxification Pathways in the Zebrafish (Danio rerio) Embryo, Asha D. Jaja-Chimedza, Miroslav Gantar, and Gregory D. Mayer
Science behind management of Shark Bay and Florida Bay, two P-limited subtropical systems with different climatology and human pressures, Gary A. Kendrick, James W. Fourqurean, Mathew A. Fraser, Michael R. Heithaus, Gary D. Jackson, Kim Freidman, and David Hallac
Seagrass sediments as a global carbon sink: Isotopic constraints, Hilary Kennedy, Jeff Beggins, Carlos M. Duarte, James W. Fourqurean, Marianne Holmer, Núria Marbà, and Jack J. Middleburg
Hydrological Conditions Control P Loading and Aquatic Metabolism in an Oligotrophic, Subtropical Estuary, Gregory R. Koch, Dan Childers, Peter A. Staehr, René M. Price, Stephen E. Davis, and Evelyn E. Gaiser
Benthic diatom assemblages as indicators of water quality in the Everglades and three tropical karstic wetlands, Josette M. La Hée and Evelyn E. Gaiser
Applying stable isotopes to examine food-web structure: an overview of analytical tools, Craig A. Layman, Marcio S. Araujo, Ross Boucek, Caroline M. Hammerschlag-Peyer, Elizabeth Harrison, Zachary R. Jud, Philip Matich, Adam E. Rosenblatt, Jeremy J. Vaudo, Lauren A. Yeager, David M. Post, and Stuart Bearhop
Effects of an extreme temperature event on the behavior and age structure of an estuarine top predator, Carcharhinus leucas, Philip Matich and Michael R. Heithaus
Transcriptional Response of Two Core Photosystem Genes in Symbiodinium spp. Exposed to Thermal Stress, Michael P. McGinley, Matthew D. Aschaffenburg, Daniel D. Pettay, Robin T. Smith, Todd C. LaJeunesse, and Mark E. Warner
Insights into Migration and Development of Coral Black Band Disease Based on Fine Structure Analysis, Aaron Miller, Patricia Blackwelder, Husain Al-Sayegh, and Laurie L. Richardson
American Alligator Digestion Rate of Blue Crabs and Its Implications for Stomach Contents Analysis, James C. Nifong, Adam E. Rosenblatt, Nathan A. Johnson, William Barichivich, Brian R. Silliman, and Michael R. Heithaus
Estimating Global “Blue Carbon” Emissions from Conversion and Degradation of Vegetated Coastal Ecosystems, Linwood Pendleton; Daniel C. Donato; Brian C. Murray; Stephen Crooks; W. Aaron Jenkins; Samantha Sifleet; Christopher Craft; James W. Fourqurean; J. Boone Kauffman; Núria Marbà,; Patrick Megonigal; Emily Pidgeon; Dorothee Herr; David Gordon; and Alexis Baldera
Arnfried Antonius, coral diseases, and the AMLC, Laurie L. Richardson
A Quantitative Assay for the Juvenile Hormones and Their Precursors Using Fluorescent Tags, Crisalejandra Rivera-Perez, Marcela Nouzova, and Fernando G. Noriega
Slow Isotope Turnover Rates and Low Discrimination Values in the American Alligator: Implications for Interpretation of Ectotherm Stable Isotope Data, Adam E. Rosenblatt and Michael R. Heithaus
A complex multilevel attack on Pseudomonas aeruginosa algT/U expression and AlgT/U activity results in the loss of alginate production, Robert Sautter, Damaris Ramos, Lisa Schneper, Oana Ciofu, Tina Wassermann, Arne Heydron, Morton Hentzer, Niels Hoiby, Arsalan Kharazmi, Soren Molin, Caroline A. DeVries, Dennis E. Ohman, and Kalai Mathee
Controls on Ecosystem Carbon Dioxide Exchange in Short- and Long-Hydroperiod Florida Everglades Freshwater Marshes, Jessica L. Schedlbauer, Jay W. Munyon, Steven F. Oberbauer, Evelyn E. Gaiser, and Gregory Starr
Macroalgae Decrease Growth and Alter Microbial Community Structure of the Reef-Building Coral, Porites astreoides, Rebecca Vega Thurber, Deron E. Burkepile, Adrienne M.S. Correa, Andrew R. Thurber, Andrew A. Schantz, Rory Welsh, and Catharin Pritchard
Patterns of Soil Bacteria and Canopy Community Structure Related to Tropical Peatland Development, Tiffany Troxler-Gann, Makoto Ikenaga, Leonard Scinto, Joseph N. Boyer, Richard Condit, Rolando Perez, George D. Gann, and Dan Childers
Early Developmental Responses to Seedling Environment Modulate Later Plasticity to Light Spectral Quality, Eric JB von Wettberg, John R. Stinchcombe, and Johanna Schmitt
Differential serotonergic modulation of two types of aggression in weakly electric fish, Lucia Zubizarreta, Rossana Perrone, Philip K. Stoddard, Gustavo Costa, and Ana C. Silva
Articles from 2011
Long-Term Effects of Adding Nutrients to an Oligotrophic Coastal Environment, Anna R. Armitage, Thomas A. Frankovich, and James W. Fourqurean
Novel methodology for in situ carbon dioxide enrichment of benthic ecosystems, Justin E. Campbell and James W. Fourqurean
Spatio-temporal patterns and nutrient status of macroalgae in a heavily managed region of Biscayne Bay, Florida, USA, Ligia Collado-Vides, Viviana Mazzei, Travis Thyberg, and Diego Lirman
Benthic Macrophyte Distribution and Abundance in Estuarine Mangrove Lakes and Estuaries: Relationships to Environmental Variables, Thomas A. Frankovich, Douglas Morrison, and James W. Fourqurean
Book Review: Lodge, T. 2010. The Everglades Handbook: Understanding the Ecosystem. 3rd Edition. CRC Press., Evelyn E. Gaiser
Landscape patterns of periphyton in the Florida Everglades, Evelyn E. Gaiser, Paul V. McCormick, Scot E. Hagerthey, and Andrew D. Gottlieb
Alteration of forest structure modifies the distribution of scale insect, Stigmacoccus garmilleri, in Mexican tropical montane cloud forests, Heather A. Gamper, Suzanne Koptur, Jose García-Franco, and Andres Plata Stapper
Antibacterial Activity of Marine and Black Band Disease Cyanobacteria against Coral-Associated Bacteria, Miroslav Gantar, Longin T. Kaczmarsky, Dina Stanic, Aaron Miller, and Laurie L. Richardson
A Hypothesis-Testing Framework for Studies Investigating Ontogenetic Niche Shifts Using Stable Isotope Ratios, Caroline M. Hammerschlag-Peyer, Lauren A. Yeager, Marcio S. Araujo, and Craig A. Layman
Everglades Periphyton: A Biogeochemical Perspective, Scot E. Hegerthey, Brent J. Bellinger, Kristin Wheeler, Miroslav Gantar, and Evelyn E. Gaiser
Salinity tolerance ecophysiology of Equisetum giganteum in South America: a study of 11 sites providing a natural gradient of salinity stress, Chad E. Husby, Jose Delatorre, Vittorio Oreste, Steven F. Oberbauer, Danielle T. Palow, Lazaro Novara, and Alfredo Grau
Development of Gene Expression Markers of Acute Heat-Light Stress in Reef-Building Corals of the Genus Porites, Carly D. Kenkel, Galina Aglyamova, Ada Alamaru, Ranjeet Bhagooli, Roxana Capper, Ross Cunning, Amanda deVillers, Joshua A. Haslun, Laetitia Hédouin, Shashank Keshavmurthy, Kristin Kuehl, Huda Mahmoud, Elizabeth S. McGinty, Phanor H. Montoya-Maya, Caroline V. Palmer, Raffaella Pantile, Juan A. Sánchez, Tom Schils, Rachel N. Silverstein, Logan B. Squiers, Pei-Ciao Tang, Tamar L. Goulet, and Mikhail V. Matz
Recent and Historic Drivers of Landscape Change in the Everglades Ridge, Slough, and Tree Island Mosaic, Laurel Larson, Nicholas Aumen, Christopher Bernhardt, Vic Engel, Thomas Givnish, Scot Hagerthey, Judson Harvey, Lynn Leonard, Paul McCormick, Christopher Mcvoy, Gregory Noe, Martha Nungesser, Kenneth Ritchey, Fred Sklar, Tiffany Troxler-Gann, John Volin, and Debra Willard
Substituted Lactam and Cyclic Azahemiacetals Modulate Pseudomonas aeruginosa Quorum Sensing, Venkata L.A. Malladi, Adam J. Sobczak, Natalie Maricic, Senthil K. Murugapiran, Lisa Schneper, John Makemson, Kalai Mathee, and Stanislaw F. Wnuk
Temporal Population Genetic Structure of Eastern Mosquitofish in a Dynamic Aquatic Landscape, Thomas C. McElroy, Karen L. Kandel, and Joel C. Trexler
Gape size influences seasonal patterns of piscivore diets in three Neotropical rivers, Carmen G. Montaña and Craig A. Layman
Imported Asian swamp eels (Synbranchidae: Monopterus ) in North American live food markets: Potential vectors of non-native parasites, Leo G. Nico, Paul Sharp, and Timothy M. Collins
Using data from an encounter sampler to model fish dispersal, A. Obaza, D. L. DeAngelis, and Joel C. Trexler
Disturbance regime and limits on benefits of refuge use for fishes in a fluctuating hydroscape, Joseph J. Parkos III, Carl R. Ruetz III, and Joel C. Trexler
Biodegradable Magnesium Alloys: A Review of Material Development and Applications, Dharam Persaud and Anthony McGoran
Dehydroleucodin: a guaiane-type sesquiterpene lactone, Horacio A. Priesta, Khalil A. Abboud, Alvaro Velandia, Luis A. Lopez, and Manuel Alejandro Barbieri
Derivation of lake mixing and stratification indices from high-resolution lake buoy data, Jordan S. Read, David P. Hamilton, Ian D. Jones, Kohji Muraoka, Luke A. Winslow, Ryan Kroiss, Chin H. Wu, and Evelyn E. Gaiser
Experimental determination of effects of water depth on Nymphaea odorata growth, morphology and biomass allocation, Jennifer H. Richards, Tiffany Troxler-Gann, David W. Lee, and Michael S. Zimmerman
Does variation in movement tactics and trophic interactions among American alligators create habitat linkages?, Adam E. Rosenblatt and Michael R. Heithaus
Comparison of snail density, standing stock, and body size between Caribbean karst wetlands and other freshwater ecosystems, Clifton B. Ruehl and Joel C. Trexler
Thermal Adaptation and Diversity in Tropical Ecosystems: Evidence from Cicadas (Hemiptera, Cicadidae), Allen F. Sanborn, James E. Heath, Polly K. Phillips, Maxine S. Heath, and Fernando G. Noriega
Indirect and direct controls of macroinvertebrates and small fish by abiotic factors and trophic interactions in the Florida Everglades, Brooke L. Sargeant, Evelyn E. Gaiser, and Joel C. Trexler
Controls on sensible heat and latent energy fluxes from a short-hydroperiod Florida Everglades marsh, Jessica L. Schedlbauer, Steven F. Oberbauer, Gregory Starr, and Kristine L. Jimenez
Tyrosine Phosphorylation-Mediated Signaling Pathways in Dictyostelium, Tong Sun and Leung Kim
Diel and seasonal variation in the use of a nearshore sandflat by a ray community in a near pristine system, Jeremy J. Vaudo and Michael R. Heithaus
Ecology and distribution of diatoms in Biscayne Bay, Florida (USA): Implications for bioassessment and paleoenvironmental studies, Anna Wachnicka, Evelyn E. Gaiser, and Joseph N. Boyer
Biogeochemical Processes on Tree Islands in the Greater Everglades: Initiating a New Paradigm, Paul R. Wetzel, Fred H. Sklar, Carlos A. Coronado, Tiffany Troxler-Gann, Steven L. Krupa, Pamela L. Sullivan, Sharon Ewe, René M. Price, Susan Newman, and William H. Orem
Articles from 2010
Nutrient enrichment, grazer identity, and their effects on epiphytic algal assemblages: field experiments in subtropical turtlegrass Thalassia testudinum meadows, Lesley P. Baggett, Kenneth L. Heck Jr., Thomas A. Frankovich, A R. Armitage, and James W. Fourqurean
Impact of Herbivore Identity on Algal Succession and Coral Growth on a Caribbean Reef, Deron E. Burkepile and Mark E. Hay
Impacts of hurricanes on surface water flow within a wetland, Yang Deng, Helena M. Solo-Gabriele, Michael Laas, Lynn Leonard, Dan Childers, Guoqing He, and Victor Engel
Artificial reefs concentrate nutrients and alter benthic community structure in an oligotrophic, subtropical estuary, Bryan M. Dewsbury and James W. Fourqurean
Combination of 16S rRNA variable regions provides a detailed analysis of bacterial community dynamics in the lungs of cystic fibrosis patients, Melissa S. Doud, Michael Light, Gisela Gonzalez, Giri Narasimhan, and Kalai Mathee
Patterns and ecosystem consequences of shark declines in the ocean, Francesco Ferretti, Boris Worm, Gregory L. Britten, Michael R. Heithaus, and Heike K. Lotze
Epiphyte loads on seagrasses and microphytobenthos abundance are not reliable indicators of nutrient availability in oligotrophic coastal ecosystems, James W. Fourqurean, Meredith F. Muth, and Joseph N. Boyer
Are mangroves in the tropical Atlantic ripe for invasion? Exotic mangrove trees in the forests of South Florida, James W. Fourqurean, Thomas J. Smith III, Jennifer Possley, Timothy M. Collins, David W. Lee, and Sandra Namoff
Mastogloia smithii var lacustris Grun.: A Structural Engineer of Calcareous Mats in Karstic Subtropical Wetlands, Evelyn E. Gaiser, Josette M. La Hée, Franco A.C. Tobias, and Anna H. Wachnicka
Factors Controlling Surface Water Flow in a Low-gradient Subtropical Wetland, Guoqing He, Victor Engel, Lynn Leonard, Alex Croft, Dan Childers, Michael Laas, Yang Deng, and Helena M. Solo-Gabriele
Modeling seasonal dynamics of small fish cohorts in fluctuating freshwater marsh landscapes, Fred Jopp, Donald L. DeAngelis, and Joel C. Trexler
Pseudomonas aeruginosa β-lactamase induction requires two permeases, AmpG and AmpP, Kok-Fai Kong, Alian Aguila, Kalai Mathee, and Lisa Schnepper
Beta-lactam antibiotics: from antibiosis to resistance and bacteriology, Kok-Fai Kong, Lisa Schneper, and Kalai Mathee
Ants and Plants with Extrafloral Nectaries in Fire Successional Habitates on Andros (Bahamas), Suzanne Koptur, Pascale Williams, and Zuriany Olive
Using bottles to study shade responses of seedlings and other plants, David W. Lee and Eric Von Wettberg
Legacy and Fate of Mercury and Methylmercury in the Florida Everglades, Guangliang Liu, G. Melodie Naja, Peter Kalla, Dan Sceidt, Evelyn E. Gaiser, and Yong Cai
Conclusions about Niche Expansion in Introduced Impatiens walleriana Populations Depend on Method of Analysis, Lisa Mandle, Dan L. Warren, Matthias H. Hoffman, A. Townsend Peterson, Johanna Schmitt, and Eric J. von Wettberg
Contrasting patterns of individual specialization and trophic coupling in two marine apex predators, Philip Matich, Michael R. Heithaus, and Craig A. Layman
Size-based variation in intertissue comparisons of stable carbon and nitrogen isotopic signatures of bull sharks (Carcharhinus leucas) and tiger sharks (Galeocerdo cuvier), Philip Matich, Michael R. Heithaus, and Craig A. Layman
Bilirubin Present in Diverse Angiosperms, Cary Pirone, Jodie V. Johnson, J. Martin E. Quirke, Horacio A. Priestap, and David W. Lee
Sessile snails, dynamic genomes: gene rearrangements within the mitochondrial genome of a family of caenogastropod molluscs, Timothy A. Rawlings, Martin J. MacInnis, Rudiger Bieler, Jeffrey L. Boore, and Timothy M. Collins
Modeling Nymphoides architecture: A morphological analysis of Nymphoides aquatica (Menyanthaceae), Jennifer H. Richards, Marlene Dow, and Tiffany Troxler-Gann
Water source utilization and foliar nutrient status differs between upland and flooded plant communities in wetland tree islands, Amartya K. Saha, Leonel da Silveira O’Reilly Sternberg, Michael S. Ross, and Fernando Miralles-Wilhelm
Seasonal differences in the CO2 exchange of a short-hydroperiod Florida Everglades marsh, Jessica L. Schedlbauer, Steven F. Oberbauer, Gregory Starr, and Kristine L. Jimenez
Fire and grazing in a mesic tallgrass prairie: impacts on plant species and functional traits, Marko J. Spasojevic, Rebecca J. Aicher, Gregory R. Koch, Emily S. Marquardt, Nicholas Mirotchnick, Tiffany G. Troxler, and Scott Collins
Lake metabolism and the diel oxygen technique: State of the science, Peter A, Staehr; Darren Bade; Matthew C. Van de Bogert; Gregory R. Koch; Craig Williamson; Paul Hanson; Jonathan J. Cole; and Tim Kratz
Biogeochemical Contributions of Tree Islands to Everglades Wetland Landscape Nitrogen Cycling During Seasonal Inundation, Tiffany Troxler-Gann and Dan Childers
Lithium enhances cortical mRNA expression in ovariectomized C57BL/6J mice, James J. Valdés, Franchesca M. Ramirez, Barbara Juarez, and Ophelia Weeks
speCombined estradiol and lithium increase ER-α mRNA in embryonic C57BL/6J primary hippocampal cultures, James J. Valdés and Ophelia Weeks
Mother–offspring isotope fractionation in two species of placentatrophic sharks, Jeremy J. Vaudo, P. Matich, and Michael R. Heithaus
How Anthocyanin Mutants Respond to Stress: the Need to Distinguish Between Stress Tolerance and Maximal Vigour, Eric JB von Wettberg, Maureen L. Stanton, and Justen B. Whittall
Distribution of Diatoms and Development of Diatom-Based Models for Inferring Salinity and Nutrient Concentrations in Florida Bay and Adjacent Coastal Wetlands of South Florida (USA), Anna Wachnicka, Evelyn E. Gaiser, Laurel Collins, Thomas J. Frankovich, and Joseph N. Boyer
Faculty Publications from 2009
The GAAS Metagenomic Tool and Its Estimations of Viral and Microbial Average Genome Size in Four Major Biomes, Florent E. Angly, Dana Willner, Alejandra Prieto-Davo, Robert A. Edwards, Robert Schmieder, Rebecca Vega-Thurber, Dionsios A. Antonopoulos, Katie Barott, Matthew T. Cottrell, Christelle Desnues, Elizabeth A. Dinsdale, Mike Furlan, Matthew Haynes, Matthew R. Henn, Yongfei Hu, David L. Kirchman, Tracey McDole, John D. McPherson, Folker Meyer, R. Michael Miller, Egbert Mundt, Robert K. Naviaux, Beltran Rodriguez-Mueller, Rick Stevens, Linda Wegley, Lixin Zhang, Baoli Zhu, and Forest Rohwer
Unravelling the evolution of autumn colours: an interdisciplinary approach., Marco Archetti, Thomas F. Döring, Snorre B. Hagen, Nicole M. Hughes, Simon R. Leather, David W. Lee, Simcha Lev-Yadun, Yiannis Manetas, Helen J. Ougham, Paul G. Schaberg, and Howard Thomas
Stable isotopes reveal complex changes in trophic relationships following nutrient addition in a coastal marine ecosystem, Anna R. Armitage and James W. Fourqurean
Comparative transcriptome analyses of Pseudomonas aeruginosa, Deepak Balasubramania and Kalai Mathee
Comparative transcriptome analyses of Pseudomonas aeruginosa, Deepak Balasubramanian and Kalai Mathee
Calcium fluxes in Hoplosternum littorale (tamoatá) exposed to different types of Amazonian waters, Bernardo Baldisserotto, Carlos Eduardo Copatti, Levy Carvalho Gomes, Edsandra Campos Chagas, Richard P. Brinn, and Rodrigo Roubach
Interspecific variation in the elemental and stable isotope content of seagrasses in South Florida, Justin E. Campbell and James W. Fourqurean
The Ideas Lab Concept, Assembling the Tree of Life, and AVAToL, Timothy Collins, Maureen Kearney, and David Maddison
A conceptual ecological model to facilitate understanding the role of invasive species in large-scale ecosystem restoration, Robert F. Doren, Jennifer H. Richards, and John C. Volin
Invasive exotic plant indicators for ecosystem restoration: An example from the Everglades restoration program, Robert F. Doren, John C. Volin, and Jennifer H. Richards
A k2A-positive Klebsiella pneumoniae causes liver and brain abscess in a Saint Kitt’s man, Melissa S. Doud, Reni Grimes-Zeppegno, Enrique Molina, Nancimae Miller, Danajeyan Balachandar, Lisa Schneper, Robert Poppiti, and Kalai Mathee
Are mangroves in the tropical Atlantic ripe for invasion? Exotic mangrove trees in the forests of South Florida, James W. Fourqurean, Thomas J. Smith III, Jennifer Possley, Timothy M. Collins, David W. Lee, and Sandra Namoff
Nutrient effects on seagrass epiphyte community structure in Florida Bay, Thomas A. Frankovich, Anna R. Armitage, Anna Honorata Wachnicka, Evelyn E. Gaiser, and James W. Fourqurean
The White Ibis and Wood Stork as indicators for restoration of the everglades ecosystem, Peter Frederick, Dale E. Gawlik, John C. Ogden, Mark I. Cook, and Michael Lusk
Periphyton as an indicator of restoration in the Everglades, Evelyn E. Gaiser