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Faculty Publications from 2018

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Interactive effects of herbivory and substrate orientation on algal community dynamics on a coral reef, Alain Duran, Ligia Collado-Vides, L. Palma, and D. E. Burkepile

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Optimal swimming strategies and behavioral plasticity of oceanic whitetip sharks, Yannis Papastamatiou, Gil Iosilevskii, Vianey Leos-Barajas, Edd. J. Brooks, Lucy A. Howey, Demian D. Chapman, and Yuuki Y. Watanabe

Articles from 2017

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Predicting wading bird and aquatic faunal responses to ecosystem restoration scenarios, James M. Beerens, Joel C. Trexler, and Christopher P. Catano

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Non-native molluscan colonizers on deliberately placed shipwrecks in the Florida Keys, with description of a new species of potentially invasive worm-snail (Gastropoda: Vermetidae), Rudiger Bieler, Camila Granados-Cifuentes, Timothy A. Rawlings, Petra Sierwald, and Timothy M. Collins

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Resetting predator baselines in coral reef ecosystems, Darcy Bradley, Eric Conklin, Yannis Papastamatiou, Douglas J. McCauley, Kydd Pollock, Amanda Pollock, Bruce E. Kendell, Steven D. Gaines, and Jennifer E. Caselle

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Growth and life history variability of the grey reef shark (Carcharhinus amblyrhynchos) across its range, Darcy Bradley, Eric Conklin, Yannis P. Papastamatiou, Douglas J. McCauley, Kydd Pollock, Bruce E. Kendell, Steven D. Gaines, and Jennifer E. Caselle

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No persistent behavioural effects of SCUBA diving on reef sharks, Darcy Bradley, Yannis Papastamatiou, and Jennifer Caselle

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Seasonal Recruitment and Survival Strategies of Palisada Cervicornis Comb. Nov. (Ceramiales, Rhodophyta) in Coral Reefs, Ligia Collado-Vides, Alain Duran, Elizabeth Armenis, Valéria Cassano, Deron Burkepile, Andrew A. Shantz, Laura Palma, Jhoana Díaz-Larrea, and Abel Sentíes

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Fishing, pollution, climate change, and the long-term decline of coral reefs off Havana, Cuba, Alain Duran, A. A. Shantz, D. E. Burkepile, Ligia Collado-Vides, W. M. Ferrer, Laura Palma, A. Ramos, and S. P. Gozalez-Diaz

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Light Attenuation in Estuarine Mangrove Lakes, Thomas A. Frankovich, David T. Rudnick, and James W. Fourqurean

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Linking fishes to multiple metrics of coral reef structural complexity using three-dimensional technology, M. González-Rivero, Alastair R. Harborne, A. Herrera-Reveles, Y. M. Bozec, A. Rogers, A. Friedman, A. Ganase, and O. Hoegh-Guldberg

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Allatotropin: A pleiotropic neuropeptide that elicits mosquito immune responses, Salvador Hernández-Martínez, Minerva Sánchez-Zavaleta, Kevin Brito, Antonia Herrera-Ortiz, Sheila Ons, and Fernando G. Noriega

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CO2 released by carbonate sediment production in some coastal areas may offset the benefits of seagrass “Blue Carbon” storage, Jason L. Howard, Joel C. Creed, Mariana V.P. Aguiar, and James W. Fourqurean

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Basic surface features of nuclear FKBPs facilitate chromatin binding, Andrew Leung, Francy-Pesek Jardim, Neda Savic, Yoan R. Monneau, Rodrigo Gonzalez-Romero, Geoff Gudavicius, Jose M. Eirin-Lopez, Till Bartke, Cameron D. Mackereth, Juan Ausio, and Christopher J. Nelson

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Modeled CO2 Emissions from Coastal Wetland Transitions to Other Land Uses: Tidal Marshes, Mangrove Forests, and Seagrass Beds, Catherine E. Lovelock, James W. Fourqurean, and James T. Morris

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Phosphorus scarcity and desiccation stress increase the occurrence of dominant taxa in wetland benthic primary producer communities, L. Marazzi, Evelyn E. Gaiser, and Franco A.C. Tobias

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Unexpected patterns of global population structure in melon-headed whales Peponocephala electra, Karen K. Martien, Brittany L. Hancock-Hanser, Robin W. Baird, Jeremy J. Kiszka, Jessica M. Aschettino, Marc Oremus, and Marie C. Hill

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Modeling the flux of metabolites in the juvenile hormone biosynthesis pathway using generalized additive models and ordinary differential equations, Raúl O. Martínez-Rincón, Crisalejandra Rivera-Pérez, Luis Diambra, and Fernando G. Noriega

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Ecological niche partitioning within a large predator guild in a nutrient-limited estuary, Philip Matich, Jerald S. Ault, Ross E. Boucek, David R. Bryan, Kirk R. Gastrich, Christine L. Harvey, Michael R. Heithaus, Jeremy J. Kiszka, Valeria A. Paz, Jennifer S. Rehage, and Adam E. Rosenblatt

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Scale and spatial consistency of specialization in an endemic and abundant freshwater diatom from the Caribbean Basin, Viviana Mazzei and Evelyn E. Gaiser

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Calcareous green algae standing stock in a tropical sedimentary coast, Ileana Ortegón-Aznar, Andrea Chuc-Contreras, and Ligia Collado-Vides

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Tet2 loss leads to hypermutagenicity in haematopoietic stem/progenitor cells, Feng Pan, Thomas S. Wingo, Zhigang Zhao, Rui Gao, Hideki Makishima, Guangbo Qu, Li Lin, Miao Yu, Janice R. Ortega, Jiapeng Wang, Aziz Nazha, Li Chen, Bing Yao, Can Liu, Shi Chen, Ophelia Weeks, Hongyu Ni, and Brittany Lynn Phillips

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The role of isolation on contrasting phylogeographic patterns in two cave crustaceans, Jorge L. Pérez-Moreno, Gergely Balázs, Blake Wilkins, Gábor Herczeg, and Heather D. Bracken-Grissom

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Molecular and Biochemical Methods Useful for the Epigenetic Characterization of Chromatin-Associated Proteins in Bivalve Molluscs, Ciro Rivera-Casas, Rodrigo Gonzalez-Romero, Rafael A. Garduño, Manjinder S. Cheema, Juan Ausio, and Jose M. Eirin-Lopez

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How micronutrients influence the physiology of mosquitoes, Crisalejandra Rivera-Pérez, Mark E. Clifton, and Fernando G. Noriega

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Phase heterogeneity in carbonate production by marine fish influences their roles in sediment generation and the inorganic carbon cycle, Michael A. Salter, Alastair R. Harbonne, Chris T. Perry, and Rod W. Wilson

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Spatial and temporal variation in abundance, group size and behaviour of bottlenose dolphins in the Florida coastal Everglades, Robin E. Sarabia, Michael R. Heithaus, and Jeremy J. Kiszka

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Cancer Immunoprevention and Public Health, Sandeep K. Singh and Mehmet Tevfik Dorak

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A Hormonal Signaling Cascade During an Early Adult Critical Period Required for Courtship Memory Retention in Drosophila, Sang Soo Lee, Yike Ding, Natalie Karapetians, Crisalejandra Rivera-Perez, Fernando G. Noriega, and Micheal E. Adams

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Phylogenetic evidence from freshwater crayfishes that cave adaptation is not an evolutionary dead-end, David B. Stern, Jesse Breinholt, Carlos Pedrazaz-Lara, Marilu Lopez-Mejia, Christopher L. Owen, Heather D. Bracken-Grissom, James W. Fetzner Jr., and Keith A. Crandall

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Halophytes can salinize soil when competing with glycophytes, intensifying effects of sea level rise in coastal communities, Kristie S. Wendelberger and Jennifer H. Richards

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Laucysteinamide A, a Hybrid PKS/NRPS Metabolite from a Saipan Cyanobacterium, cf. Caldora penicillata, Chen Zhang, C. Benjamin Naman, Niclas Engene, and William H. Gerwick

Submissions from 2016

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Metagenomics, Metatranscriptomics, and Metabolomics Approaches for Microbiome Analysis, Vanessa Aguiar-Pulido, Wenrui Huang, Victoria Suarez-Ulloa, Trevor Cickovski, Kalai Mathee, and Giri Narasimhan

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Effects of gamma irradiation on the biomechanical properties of peroneus tendons, Christopher M. Aguila, Gaëtan J.R. Delcroix, David N. Kaimrajh, Edward L. Milne, H. Thomas Temple, and Loren L. Latta

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Carbon storage in seagrass soils: long-term nutrient history exceeds the effects of near-term nutrient enrichment, A. R. Armitage and James W. Fourqurean

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Mechanisms That Generate Resource Pulses in a Fluctuating Wetland, Bryan A. Boston, Dale E. Gawlik, and Joel C. Trexler

A once in 10 year drought alters the magnitude and quality of a floodplain prey subsidy to coastal river fishes, Ross E. Boucek, Mariajesus Soula, Felipe Tamayo, and Jennifer S. Rehage

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A once in ten year drought alters the magnitude and quality of a floodplain trophic subsidy to coastal river fishes, Ross E. Boucek, Mariajesus Soula, Felipe Tamayo, and Jennifer S. Rehage

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Uniting paradigms of connectivity in marine ecology, Christopher J. Brown, Alastair R. Harborne, Claire B. Paris, and Peter J. Mumby

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Phylogeny of Stenopodidea (Crustacea: Decapoda) shrimps inferred from nuclear and mitochondrial genes reveals non-monophyly of the families Spongicolidae and Stenopididae, and most of their composite genera, Chien-Lin Chen, Joseph W. Goy, Heather D. Bracken-Grissom, Darryl L. Felder, Ling Ming Tsang, and Tin-Yam Chan

A review of seagrass economic valuations: Gaps and progress in valuation approaches, Bryan M. Dewsbury, Mahadev Bhat, and James W. Fourqurean

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Functional Diversification after Gene Duplication: Paralog Specific Regions of Structural Disorder and Phosphorylation in p53, p63, and p73, Helena G. Dos Santos, Janelle Nunez-Castilla, and Jessica Siltberg-Liberles

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Paralog-Specific Patterns of Structural Disorder and Phosphorylation in the Vertebrate SH3–SH2–Tyrosine Kinase Protein Family, Helena G. Dos Santos and Jessica Siltberg-Liberles

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Seasonal regulation of herbivory and nutrient effects on macroalgal recruitment and succession in a Florida coral reef, Alain Duran, Ligia Collado-Vides, and Deron E. Burkepile

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Commentary: Novel competitors shape species' responses to climate change, Belen Fadrique and Kenneth J. Feeley

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Estimating the global conservation status of more than 15,000 Amazonian tree species, Kenneth J. Feeley

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Environmental drivers of diurnal visits by transient predatory fishes to Caribbean patch reefs, Alastair R. Harbonne, J. D. Selwyn, J. M. Lawson, and M. Galo

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Marine mammals and sonar: Dose-response studies, the risk-disturbance hypothesis and the role of exposure context, Catriona M. Harris, Len Thomas, Erin A. Falcone, John Hildebrand, Dorian Houser, Petter H. Kvadsheim, Frans-Peter A. Lam, Patrick J.O. Miller, David J. Moretti, Andrew J. Read, Hans Slabbekoorn, Brandon L. Southall, Peter L. Tyack, Douglas Wartzok, and Vincent M. Janick

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Examination of Surface Temperature Modification by Open-Top Chambers along Moisture and Latitudinal Gradients in Arctic Alaska Using Thermal Infrared Photography, Nathan C. Healey, Steve F. Oberbauer, and Robert D. Hollister

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Genome Evolution in the Obligate but Environmentally Active Luminous Symbionts of Flashlight Fish, Tory A. Hendry, Jeffrey R. de Wet, Katherine E. Dougan, and Paul V. Dunlap

Fertilization Changes Seagrass Community Structure but not Blue Carbon Storage: Results from a 30-Year Field Experiment, Jason L. Howard, Alex Perez, Christian Lopes, and James W. Fourqurean

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Relations between morphology, buoyancy and energetics of requiem sharks, Gil Iosilevskii and Yannis Papastamatiou

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Inferring animal social networks and leadership: applications for passive monitoring arrays, David M.P. Jacoby, Yannis Papastamatiou, and Robin Freeman

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Genetic Patterns of Domestication in Pigeonpea (Cajanus cajan (L.) Millsp.) and Wild Cajanus Relatives, Mulualem T. Kassa, R. Varma Penmetsa, Noelia Carrasquilla-Garcia, Birinchi K. Sarma, Subhojit Datta, Hari D. Upadhyaya, Rajeev K. Varshney, Eric J.B. von Wettberg, and Douglas R. Cook

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Density Dependence Drives Habitat Production and Survivorship of Acropora cervicornis Used for Restoration on a Caribbean Coral Reef, Mark C. Ladd, Andrew A. Shantz, Ken Nedimyer, and Deron E. Burkepile

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Analysis of animal accelerometer data using hidden Markov models, Vianey Leos-Barajas, Theoni Photopoulou, Roland Langrock, Toby A. Patterson, Yuuki Watanabe, Megan Murgatroyd, and Yannis Papastamatiou

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Sensitivity to low-temperature events: Implications for CO2 dynamics in subtropical coastal ecosystems, Sparkle L. Malone, Jordan Barr, Jose D. Fuentes, Steven F. Oberbauer, Christina L. Staudhammer, Evelyn E. Gaiser, and Gregory Starr

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Algal richness and life-history strategies are influenced by hydrology and phosphorus in two major subtropical wetlands, Luca Marazzi, Evelyn E. Gaiser, Vivienne J. Jones, Franco A.C. Tobias, and Anson W. Mackay

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The neurotranscriptome of the Aedes aegypti mosquito, Benjamin J. Matthews, Carolyn S. McBride, Matthew DeGennaro, Orion Despo, and Leslie B. Vosshall

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Salinity Adaptation and the Contribution of Parental Environmental Effects in Medicago truncatula, Ken S. Moriuchi, Maren L. Friesen, Matilde A. Cordeiro, Mounawer Badri, Wendy T. Vu, Bradley J. Main, Mohamed Elarbi Aouani, Sergey V. Nuzhdin, Sharon Y. Strauss, and Eric JB von Wettberg

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Contributions of organic and inorganic matter to sediment volume and accretion in tidal wetlands at steady state, James T. Morris, Donald C. Barber, John C. Callaway, Randy Chambers, Scott C. Hagen, Charles S. Hopkins, Beverly J. Johnson, Patrick Megonigal, Scott C. Neubauer, Tiffany Troxler-Gann, and Cathleen Wigand

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Climate seasonality limits leaf carbon assimilation and wood productivity in tropical forests, Steve F. Oberbauer

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Life in the Underworld: Anchialine cave biology in the era of speleogenomics, Jorge L. Perez-Moreno, Thomas M. Iliffe, and Heather D. Bracken-Grissom

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Early Genotoxic and Cytotoxic Effects of the Toxic Dinoflagellate Prorocentrum lima in the Mussel Mytilus galloprovincialis, María Verónica Prego-Faraldo, Vanessa Valdiglesias, Blanca Laffon, Josefina Mendez, and Jose M. Eirin-Lopez

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Avoiding Regions Symptomatic of Conformational and Functional Flexibility to Identify Antiviral Targets in Current and Future Coronaviruses, Jordon Rahaman and Jessica Siltberg-Liberles

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Fast, ultra-trace detection of juvenile hormone III from mosquitoes using mass spectrometry, Cesar E. Ramirez, Marcela Nouzova, Paolo Benigni, Martin Quirke, Fernando G. Noriega, and Francisco Fernandez-Lima

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Many species risk mountain top extinction long before they reach the top, Evan Rehm and Kenneth J. Feeley

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Bushmeat hunting and extinction risk to the world's mammals, William J. Ripple, Katharine Abernethy, Matthew G. Betts, Guillaume Chapron, Rodolfo Dirzo, Mauro Galetti, Taal Levi, Peter A. Lindsey, David W. Macdonald, Brian Machovina, Thomas M. Newsome, Carlos A. Peres, Arian D. Wallach, Christopher Wolf, and Hillary Young

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The characterization of macroH2A beyond vertebrates supports an ancestral origin and conserved role for histone variants in chromatin, Ciro Rivera-Casas, Rodrigo Gonzalez-Romero, Manjinder S. Cheema, Juan Ausio, and Jose M. Eirin-Lopez

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Characterization of mussel H2A.Z.2: a new H2A.Z variant preferentially expressed in germinal tissues from Mytilus, Ciro Rivera-Casas, Rodrigo Gonzalez-Romero, Ángel Vizoso-Vazquez, Manjinder S. Cheema, M. Esperenza Cerdán, Josefina Méndez, Juan Ausió, and Jose M. Eirin-Lopez

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The adaptive evolution of herbivory in freshwater systems, Jessica L. Sanchez and Joel C. Trexler

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A childhood acute lymphoblastic leukemia genome-wide association study identifies novel sex-specific risk variants, Sandeep K. Singh, Philip J. Lupo, Michael E. Scheurer, Anshul Saxena, Amy E. Kennedy, Boubakari Ibrahimou, Manuel Alejandro Barbieri, Ken I. Mills, Jacob L. McCauley, Mehmet Fatih Okcu, and Mehmet Tevfik Dorak

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Maximum swimming speeds of sailfish and three other large marine predatory fish species based on muscle contraction time and stride length: a myth revisited, Morten B.S. Svendsen, Paolo Domenici, Stefano Marras, Jens Krause, Kevin M. Boswell, Ivan Rodriguez-Pinto, Alexander D.M. Wilson, Ralf H.J.M. Kurvers, Paul E. Viblanc, Jean S. Finger, and John F. Steffensen

Prescribed burn creates pulsed effects on a wetland aquatic community, Louise S. Venne, Joel C. Trexler, and Peter C. Frederick

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Allatostatin-C antagonizes the synergistic myostimulatory effect of allatotropin and serotonin in Rhodnius prolixus (Stal), María José Villalobos-Sambucaroa, Luis Animal Diambra, Fernando G. Noriega, and Jorge Rafael Ronderos

Persistence and diversity of directional landscape connectivity improves biomass pulsing in simulations of expanding and contracting wetlands, Simeon Yurek, Donald L. DeAngelis, Joel C. Trexler, Jessica A. Klassen, and Laurel G. Larsen

Faculty Publications from 2015

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Pervasive Local-Scale Tree-Soil Habitat Association in a Tropical Forest Community, Elodie Allie, Raphael Pelissier, Julien Engel, Pascal Petronelli, Vincent Freycon, Vincent Deblauwe, Laure Soucemarianadin, Jean Weigel, and Christopher Baraloto

Predators help protect carbon stocks in blue carbon ecosystems, Trisha B. Atwood, Rod M. Connolly, Euan G. Ritchie, Catherine E. Lovelock, Michael R. Heithaus, Graeme C. Hays, James W. Fourqurean, and Peter I. Macreadie

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Large-Scale Patterns of Turnover and Basal Area Change in Andean Forests, Selene Baez, Agustina Malizia, Julieta Carilla, Cecilia Blundo, Manuel Aguilar, Nikolay Aguirre, Zhofre Aquirre, Esteban Alvarez, Francisco Cuesta, Alvaro Duque, William Farfan-Rios, Karina Garcia-Cabrera, Ricardo Grau, Juergen Homeier, Reynaldo Linares-Palomino, Lucio R. Malizia, Omar Melo Cruz, and Kenneth J. Feeley

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Cannot See the Flowers nor the Tree: Plants and the Pill, Bradley C. Bennett

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Defending against pathogens - immunological priming and its molecular basis in a sea anemone, cnidarian, Tanya Brown and Mauricio Rodriguez-Lanetty

Using Scenario Planning to Evaluate the Impacts of Climate Change on Wildlife Populations and Communities in the Florida Everglades, Christopher P. Catano, Stephanie S. Romañach, James M. Beerens, Leonard G. Pearlstine, Laura A. Brandt, Kristen M. Hart, Frank J. Mazzotti, and Joel C. Trexler

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Predation Risk, Resource Quality, and Reef Structural Complexity Shape Territoriality in a Coral Reef Herbivore, Laura B. Catano, Bridgette K. Gunn, Megan C. Kelley, and Deron E. Burkepile

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Contrasting demographic history and gene flow patterns of two mangrove species on either side of the Central American Isthmus, Ivania Ceron-Souza, Elena G. Gonzalez, Andrea E. Schwarzbach, Dayana E. Salas-Leiva, Elsie Rivera-Ocasio, Nelson Toro-Perea, Eldredge Bermingham, and McMillan W. Owen

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Inhibitory effect of Clitoria ternatea flower petal extract on fructose-induced protein glycation and oxidation-dependent damages to albumin in vitro, Poramin Chayaratanasin, Manuel Alejandro Barbieri, Nipattra Suanpairintr, and Sirichai Adisakwattana

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Comparative Analysis of Wolbachia Genomes Reveals Streamlining and Divergence of Minimalist Two-Component Systems, Steen Christensen and Laura Renee Serbus

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Farnesol-Like Endogenous Sesquiterpenoids in Vertebrates: The Probable but Overlooked Functional ?Inbrome? Anti-Aging Counterpart of Juvenile Hormone of Insects?, Arnold De Loof, Elisabeth Marchal, Crisalejandra Rivera-Perez, Fernando G. Noriega, and Liliane Schoofs

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Are We Filling the Data Void? An Assessment of the Amount and Extent of Plant Collection Records and Census Data Available for Tropical South America, Kenneth Feeley

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Where are the tropical plants? A call for better inclusion of tropical plants in studies investigating and predicting the effects of climate change, Kenneth J. Feeley, Miles R. Silman, and Alvaro Duque

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Water quality, isoscapes and stoichioscapes of seagrasses indicate general P limitation and unique N cycling in shallow water benthos of Bermuda, James W. Fourqurean, S. A. Manuel, K. A. Coates, W. J. Kenworthy, and Joseph N. Boyer

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Anthropogenic ecosystem fragmentation drives shared and unique patterns of sexual signal divergence among three species of Bahamian mosquitofish, Sean T. Giery, Craig A. Layman, and R. Brian Langerhans

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Warming experiments elucidate the drivers of observed directional changes in tundra vegetation, Robert D. Hollister, Jeremy L. May, Kelseyann S. Kremers, Craig E. Tweedie, Steven F. Oberbauer, Jennifer A. Liebig, Timothy F. Botting, Robert T. Barrett, and Jessica L. Gregory

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Quantity over quality: light intensity, but not red/far-red ratio, affects extrafloral nectar production in Senna mexicana var. chapmanii, Ian M. Jones and Suzanne Koptur

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Effects of Slotted Water Control Structures on Nekton Movement within Salt Marshes, Matthew E. Kimball, Lawrence P. Rozas, Kevin M. Boswell, and James H. Cowan Jr.

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The Influence of Host Plant Extrafloral Nectaries on Multitrophic Interactions: An Experimental Investigation, Suzanne Koptur, Ian M. Jones, and Jorge E. Pena

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Diminished Response of Arctic Plants to Warming over Time, Kelseyann S. Kremers, Robert D. Hollister, and Steven F. Oberbauer

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Climate Change May Alter Breeding Ground Distributions of Eastern Migratory Monarchs (Danaus plexippus) via Range Expansion of Asclepias Host Plants, Nathan P. Lemoine

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Effects of in situ climate warming on monarch caterpillar (Danaus plexippus) development, Nathan P. Lemoine, Jillian N. Capdevielle, and John D. Parker

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Ecosystem Resistance in the Face of Climate Change: a case study from the freshwater marshes of the Florida Everglades, Sparkle L. Malone, Cynthia Keough, Christina L. Staughammer, Michael G. Ryan, William J. Parton, Paulo Olivas, Steve F. Oberbauer, Jessica Schedlbauer, and Gregory Starr

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Seagrass meadows as a globally significant carbonate reservoir, I. Mazarrasa, N. Marba, C. E. Lovelock, O. Serrano, P. S. Lavery, James W. Fourqurean, H. Kennedy, M. A. Mateo, D. Krause-Jensen, A. D. Steven L., and C. M. Duarte